Don’t Miss a Claim: How to Monitor Disqualified Claims in Your 340B Program

Written by: Samantha Mantuano, VP of Program Management Operations

 In today’s 340B environment, every claim counts. With increased oversight, tighter margins, and growing manufacturer restrictions, covered entities need to maximize their 340B savings by capturing every eligible claim. One often-overlooked opportunity lies in understanding and monitoring disqualified claims.

These are claims that, for one reason or another, didn’t qualify for 340B qualification—but could have. Rather than accepting disqualifications at face value, covered entities should treat these claims as signals for action. Below is a guide to reviewing and correcting disqualified claims, in collaboration with your third-party administrator (TPA), to ensure you aren’t leaving savings on the table.

Start by Working with Your TPA

Your TPA plays a critical role in filtering and qualifying claims for 340B eligibility, and their system often holds valuable insight into why claims are being disqualified. Start by requesting a disqualified claims report from your TPA – not all TPAs provide this proactively.

Having this visibility gives your team the opportunity to dig deeper and identify patterns or errors that can be corrected moving forward.

Key Areas to Review in Disqualified Claims

Once you have the disqualified claims report in hand, focus on the following categories

1. Pricing Fall-Offs

Sometimes a claim qualifies clinically but is disqualified due to pricing data not being available or applied correctly. This can occur if 340B pricing is delayed or not loaded.

Work with your TPA and wholesaler to determine why pricing was missing and whether those claims can be retroactively captured or reprocessed.

2. Eligibility Window Issues

Your 340B program eligibility depends heavily on encounter data and timing. Many disqualified claims stem from:

  • Providers who are 340B-eligible but whose encounters fall outside your configured eligibility window

  • Missing or delayed eligibility files

Solutions to consider:

  • Expand the eligibility window to capture a broader range of legitimate encounters

  • Audit your eligibility files and submission process to ensure complete and timely data

Even small configuration changes here can have a major impact on claims capture.

3. Medicaid Mismatches

Medicaid carve-in/carve-out status can be a common source of disqualification—especially if payor information isn’t clearly defined. Disqualified Medicaid claims may happen if:

  • The claim is incorrectly flagged as Medicaid, when it’s a Medicare or a Commercial plan

  • You don’t have the correct BIN/PCN or Group ID listed in your TPA configuration

  • Payors are not properly mapped or blocked/unblocked in the system

Take time to confirm your payor list and cross-reference it with what the TPA sees. Ensure all “should-be-qualified” payors are being handled correctly.

4. Data Feed or Switch Issues

In some cases, the problem isn’t qualification logic—it’s data availability. If your TPA isn’t receiving a complete or accurate feed of your claims data, disqualification can happen simply due to missing context.

Things to watch for:

  • A sudden drop in 340B-eligible volume that doesn’t align with patient or script trends

  • Claims from certain providers or locations missing consistently

  • Switch issues that prevent prescription information from being transmitted

If these patterns emerge, engage with your pharmacy, switch vendor, or EMR to ensure full data is being transmitted.

Make It a Routine Process

Disqualified claims review shouldn’t be a one-time effort. It should be part of your monthly or quarterly monitoring process. A regular review process can help you:

  • Identify technical or systemic issues early

  • Adjust configurations as your program evolves

  • Improve your 340B capture rate steadily over time

Final Thoughts

340B compliance will always be critical—but optimization is equally important. Disqualified claims represent real dollars and missed opportunities. By partnering with your TPA, auditing your program setup, and being proactive with your data, you can recover those claims—and more importantly, prevent future losses.

Remember, in today’s 340B world, every claim matters. Don’t let yours slip through the cracks.

Recent Articles

Pillr Health Announces Partnership with ACHC to Support Pharmacy Optimization

Leading accreditor Accreditation Commission for Health Care (ACHC) announced a new partnership with Pillr Health, a provider of innovative solutions designed to optimize pharmacy operations, particularly in the 340B program.

“Pharmacies need reliable systems, clear data, and knowledgeable support to keep operations running smoothly in a highly regulated environment,” said Caroline Girardeau, PharmD, ACHC Program Director. “Pillr Health understands that reality, and this partnership gives pharmacies another resource to help strengthen performance, support 340B program integrity, and improve access to care.”

“This partnership with ACHC enhances our ability to help clients turn accreditation into long-term operational success,” said Nate Awrich, VP & Managing Director, Pharmacy Acceleration. “Together, we are equipping pharmacies with the tools, guidance, and support needed to meet rigorous standards, improve efficiency, and expand access to high-quality care.”

Through this collaboration, Pillr Health clients receive special discounts on select ACHC Pharmacy Accreditation services and ACHCU educational resources, supporting their efforts to achieve and maintain compliance while advancing operational excellence.

Organizations pursuing ACHC Specialty Pharmacy Accreditation services are also eligible to receive a complimentary Pillr Health 340B Optimization Assessment to identify opportunities where technology and targeted services can enhance operational efficiency, compliance, and overall performance.

About ACHC

ACHC, the nation's top accreditor for specialty, infusion, and compounding pharmacy services, offers a comprehensive suite of pharmacy accreditation and distinction options, including Ambulatory Infusion Center/Suite, Infusion, Specialty, and Mail Order Pharmacy Accreditation and PCAB Accreditation for sterile and non-sterile compounding. With over 35 years of experience, ACHC has a history of driving success with industry-leading programs. ACHC develops solutions for healthcare providers worldwide and remains committed to delivering a customized, collaborative accreditation experience.

About Pillr Health

Pillr Health is a healthcare technology and services company specializing in pharmacy operations, 340B program management, and compliance-driven data solutions for health centers, hospitals and health systems. Formed through the combination of experienced healthcare and pharmacy organizations, Pillr helps covered entities navigate complex regulations while optimizing entity-owned, retail, and specialty pharmacy models to improve efficiency, expand access to care, and strengthen financial performance.

Pillr Health Acquires Cooper Strategy to Deepen Pharmacy Support for U.S. Hospitals and Health Systems


BOCA RATON, Fla. — June 9, 2026 — Pillr Health, a leading provider of software and tech-enabled services that optimize pharmacy operations, today announced that it has acquired Cooper Strategy. Based in Jupiter, Fla., Cooper Strategy helps covered entities capture 340B savings used to fund care for underserved patients. The acquisition marks another step in Pillr Health’s expansion since partnering with strategic health care investor Water Street Healthcare Partners earlier this year. 

Together, Pillr Health and Cooper Strategy offer hospitals, health systems and community health centers a platform of solutions designed to strengthen their pharmacy programs. With services spanning split billing, contract pharmacy administration, entity-owned pharmacy management, referral capture, compliance support and pharmacy optimization, the combined organization will help providers improve their pharmacy performance and uncover savings they can reinvest in caring for uninsured, low-income patients. 

“Like us, Cooper Strategy is deeply committed to helping hospitals, health systems and community health centers maximize the impact of their pharmacy programs in today’s increasingly challenging regulatory environment. Together, we will deliver even greater value to providers who depend on these programs to care for our country’s most vulnerable patients and communities,” said Skip Devanny, chief executive officer of Pillr Health. 

Thomas Bednarek, chief executive officer of Cooper Strategy, added: “Joining Pillr Health is an exciting next chapter for Cooper Strategy and the clients we serve. As part of Pillr Health, we will be able to bring our clients expanded resources, broader technology capabilities and additional solutions, all built on the same trusted, high-touch service they expect from us.” 

Bednarek will continue to lead the Cooper Strategy team as the organizations bring their capabilities together.

About Pillr Health 

Pillr Health is dedicated to transforming health care through cutting-edge solutions that enhance efficiency, optimize resources and improve patient outcomes. The company specializes in 340B program administration, helping hospitals and health systems maximize performance in the federal outpatient drug pricing program, which provides discounts to organizations serving uninsured, low-income and vulnerable patient populations. Headquartered in Boca Raton, Florida, Pillr Health serves more than 500 health care organizations nationwide through its comprehensive platform of software, analytics and managed pharmacy offerings. 


Pillr Health Acquires CaptureRx, Expanding Pharmacy Solutions to More Health Care Organizations

BOCA RATON, Fla. — May 19, 2026 — Pillr Health, a leading provider of software and tech-enabled services that optimize pharmacy operations, today announced it has acquired CaptureRx, a 340B technology and services organization based in San Antonio, Texas. The acquisition expands Pillr Health’s platform of pharmacy solutions to support more than 500 hospitals, health systems and federally qualified health centers (FQHCs) nationwide. 

With this acquisition, CaptureRx’s customers gain access to Pillr Health’s comprehensive suite of services designed to strengthen the performance of their pharmacy programs and 340B initiatives amid an increasingly complex regulatory environment. Pillr Health’s integrated platform of software, analytics and advisory services provides them with split billing, contract pharmacy administration, entity-owned pharmacy management, referral capture, compliance support and pharmacy optimization programs.  

Skip Devanny, chief executive officer of Pillr Health, who will lead the combined organization, said: “We are proud to welcome and serve the hospitals, health systems and community health centers that have been supported by CaptureRx for more than 20 years. They are the front door to care for millions of Americans, and we are committed to advancing their important work with the full strength of our pharmacy solutions and expertise.”  

With CaptureRx, Pillr Health will expand its ability to support covered entities in strengthening their pharmacy programs as they navigate mounting requirements for the 340B federal drug pricing program. This program enables eligible hospitals, health systems and FQHCs to purchase outpatient medication at significantly reduced prices, generating savings that fund care for uninsured, low-income and vulnerable patients. 

About Pillr Health 

Pillr Health is dedicated to transforming health care through cutting-edge solutions that enhance efficiency, optimize resources and improve patient outcomes. The company specializes in 340B program administration, helping hospitals and health systems maximize performance in the federal outpatient drug pricing program, which provides discounts to organizations serving uninsured, low-income and vulnerable patient populations. Headquartered in Boca Raton, Florida, Pillr Health serves more than 500 health care organizations nationwide through its comprehensive platform of software, analytics and managed pharmacy offerings. 

Ready to get started?

Ready to get started?

The Pillr Health team is here to empower your 340B program, and beyond. Reach out at the link below.

The Pillr Health team is here to empower your 340B program, and beyond. Reach out at the link below.

Ready to get started?

The Pillr Health team is here to empower your 340B program, and beyond. Reach out at the link below.